Current Proceedings on Technology

Yazarlar: Sharifah Lailee Syed Abdullah, Hazaruddin Harun

Konular:-

Anahtar Kelimeler:Particle Swarm Optimization,Linear-PSO,Motif discovery,Binary Search,Species specific, 

Özet:   This paper presents a hybrid algorithm where a ‘Linear-Particle Swarm Optimization’ algorithm is hybrid with Binary Search for discovering a motif in DNA sequences. Previously, Linear-PSO was used linear selection and linear search in order to compare all possible motifs existing in DNA sequences. Instead of using a linear search for searching motifs, this hybrid algorithm will incorporate Binary Search for searching purposes. In this study, five DNA sequences from the same species were collected from the Genbank online database. The results show that the hybrid algorithm is faster than Linear-PSO and consistently discovered the same motif during each execution.

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